PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa19g033510.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 206aa    MW: 23226.8 Da    PI: 7.9481
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa19g033510.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.9e-054769123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C+ C++ F++   L  H+++H
  Csa19g033510.1 47 YTCSFCKREFRSAQALGGHMNVH 69
                    9********************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.25E-64473No hitNo description
PfamPF139121.3E-64770IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.244774IPR007087Zinc finger, C2H2
SMARTSM003550.00384769IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804969IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0009755Biological Processhormone-mediated signaling pathway
GO:0010093Biological Processspecification of floral organ identity
GO:0010160Biological Processformation of organ boundary
GO:0042127Biological Processregulation of cell proliferation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MERSNNIELR NSFYGRARTS PWSYGDYDNY QQDHEYLLGF SWPPRSYTCS FCKREFRSAQ  60
ALGGHMNVHR RDRARLRLQQ SSSSSSTPSP PYPNPNYSYS SMATSPPPPN SPLTLFPTLS  120
PPSSPGYRAG LVRSLSPKSK HTPENACENE KSSLLVEAEE AKRLSKKDAC KFLRNDEIIS  180
LELEIGLINE SEQDLDLELR LGFAN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-144269229superman protein
2l1o_A2e-144269229Transcriptional regulator SUPERMAN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6508140.0HQ650814.1 Arabidopsis lyrata superman (SUP) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010488353.11e-149PREDICTED: transcriptional regulator SUPERMAN-like
SwissprotQ388951e-120SUP_ARATH; Transcriptional regulator SUPERMAN
TrEMBLD7L2K91e-121D7L2K9_ARALL; Putative uncharacterized protein
TrEMBLF8SLZ61e-121F8SLZ6_ARALY; Superman
STRINGfgenesh2_kg.3__2524__AT3G23130.11e-120(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM81092432
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.11e-86C2H2 family protein